custom 244k gene expression microarray Search Results


244k oligonucleotide array  (Agilent technologies)
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Agilent technologies 244k oligonucleotide array
244k Oligonucleotide Array, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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human genome cgh microarray 244k  (Agilent technologies)
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Agilent technologies human genome cgh microarray 244k
Human Genome Cgh Microarray 244k, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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244k microarray  (Agilent technologies)
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Agilent technologies 244k microarray
Summary of TCGA genomic datasets used in this study
244k Microarray, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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1×244k oligonucleotide array  (Agilent technologies)
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Agilent technologies 1×244k oligonucleotide array
Summary of TCGA genomic datasets used in this study
1×244k Oligonucleotide Array, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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human proximal promoter microarray slides (human promoter, 2 designs-244k  (Agilent technologies)
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Agilent technologies human proximal promoter microarray slides (human promoter, 2 designs-244k
Summary of TCGA genomic datasets used in this study
Human Proximal Promoter Microarray Slides (Human Promoter, 2 Designs 244k, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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methylation 450k bead chip arrays  (Illumina Inc)
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Illumina Inc methylation 450k bead chip arrays
Summary of TCGA genomic datasets used in this study
Methylation 450k Bead Chip Arrays, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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244 k human cpg island microarrays  (Agilent technologies)
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Agilent technologies 244 k human cpg island microarrays
Tumor hypermethylation of FOXB2 and FOXF1. ( A , B ) Bisulfite sequence results for 12 BRAF wildtype tumors and 8 BRAF mutant tumors, separated by the horizontal red line. Schematic display of the BSA region with <t>CpG</t> locations therein shown on top (blue). Sample IDs are given on the 5' end of the BSA region. Each circle depicts a CpG. Color code: gray = ND, white = 0% to 20%, yellow = 20% to 40%, orange = 40% to 60%, red > 60% methylation. ( C ) Boxplot showing average methylation percentage over all detected CpGs in BRAF wildtype and BRAF V600E tumors for FOXB2 (left) and FOXF1 (right). The box indicates the 25 and 75 percentiles, with the median shown in bold. Upper and lower outliers are shown as red and purple asterisks, respectively. ( D ) Schematic display of FOXB2 (top) and FOXF1 (bottom) loci depicting the location of the BSA regions in relation to MseI fragments detected on the Agilent array (significant fragments marked red, not significant as black). <t>CpG</t> <t>islands</t> are shown in green, and the BSA region is shown in blue.
244 K Human Cpg Island Microarrays, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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244 k microarray  (Agilent technologies)
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Agilent technologies 244 k microarray
Tumor hypermethylation of FOXB2 and FOXF1. ( A , B ) Bisulfite sequence results for 12 BRAF wildtype tumors and 8 BRAF mutant tumors, separated by the horizontal red line. Schematic display of the BSA region with <t>CpG</t> locations therein shown on top (blue). Sample IDs are given on the 5' end of the BSA region. Each circle depicts a CpG. Color code: gray = ND, white = 0% to 20%, yellow = 20% to 40%, orange = 40% to 60%, red > 60% methylation. ( C ) Boxplot showing average methylation percentage over all detected CpGs in BRAF wildtype and BRAF V600E tumors for FOXB2 (left) and FOXF1 (right). The box indicates the 25 and 75 percentiles, with the median shown in bold. Upper and lower outliers are shown as red and purple asterisks, respectively. ( D ) Schematic display of FOXB2 (top) and FOXF1 (bottom) loci depicting the location of the BSA regions in relation to MseI fragments detected on the Agilent array (significant fragments marked red, not significant as black). <t>CpG</t> <t>islands</t> are shown in green, and the BSA region is shown in blue.
244 K Microarray, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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gene expression microarray platforms  (Thermo Fisher)
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Thermo Fisher gene expression microarray platforms
Tumor hypermethylation of FOXB2 and FOXF1. ( A , B ) Bisulfite sequence results for 12 BRAF wildtype tumors and 8 BRAF mutant tumors, separated by the horizontal red line. Schematic display of the BSA region with <t>CpG</t> locations therein shown on top (blue). Sample IDs are given on the 5' end of the BSA region. Each circle depicts a CpG. Color code: gray = ND, white = 0% to 20%, yellow = 20% to 40%, orange = 40% to 60%, red > 60% methylation. ( C ) Boxplot showing average methylation percentage over all detected CpGs in BRAF wildtype and BRAF V600E tumors for FOXB2 (left) and FOXF1 (right). The box indicates the 25 and 75 percentiles, with the median shown in bold. Upper and lower outliers are shown as red and purple asterisks, respectively. ( D ) Schematic display of FOXB2 (top) and FOXF1 (bottom) loci depicting the location of the BSA regions in relation to MseI fragments detected on the Agilent array (significant fragments marked red, not significant as black). <t>CpG</t> <t>islands</t> are shown in green, and the BSA region is shown in blue.
Gene Expression Microarray Platforms, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dna microarray scanner  (Agilent technologies)
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Agilent technologies dna microarray scanner
Tumor hypermethylation of FOXB2 and FOXF1. ( A , B ) Bisulfite sequence results for 12 BRAF wildtype tumors and 8 BRAF mutant tumors, separated by the horizontal red line. Schematic display of the BSA region with <t>CpG</t> locations therein shown on top (blue). Sample IDs are given on the 5' end of the BSA region. Each circle depicts a CpG. Color code: gray = ND, white = 0% to 20%, yellow = 20% to 40%, orange = 40% to 60%, red > 60% methylation. ( C ) Boxplot showing average methylation percentage over all detected CpGs in BRAF wildtype and BRAF V600E tumors for FOXB2 (left) and FOXF1 (right). The box indicates the 25 and 75 percentiles, with the median shown in bold. Upper and lower outliers are shown as red and purple asterisks, respectively. ( D ) Schematic display of FOXB2 (top) and FOXF1 (bottom) loci depicting the location of the BSA regions in relation to MseI fragments detected on the Agilent array (significant fragments marked red, not significant as black). <t>CpG</t> <t>islands</t> are shown in green, and the BSA region is shown in blue.
Dna Microarray Scanner, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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human cpg island microarray (244k  (Agilent technologies)
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Agilent technologies human cpg island microarray (244k
Tumor hypermethylation of FOXB2 and FOXF1. ( A , B ) Bisulfite sequence results for 12 BRAF wildtype tumors and 8 BRAF mutant tumors, separated by the horizontal red line. Schematic display of the BSA region with <t>CpG</t> locations therein shown on top (blue). Sample IDs are given on the 5' end of the BSA region. Each circle depicts a CpG. Color code: gray = ND, white = 0% to 20%, yellow = 20% to 40%, orange = 40% to 60%, red > 60% methylation. ( C ) Boxplot showing average methylation percentage over all detected CpGs in BRAF wildtype and BRAF V600E tumors for FOXB2 (left) and FOXF1 (right). The box indicates the 25 and 75 percentiles, with the median shown in bold. Upper and lower outliers are shown as red and purple asterisks, respectively. ( D ) Schematic display of FOXB2 (top) and FOXF1 (bottom) loci depicting the location of the BSA regions in relation to MseI fragments detected on the Agilent array (significant fragments marked red, not significant as black). <t>CpG</t> <t>islands</t> are shown in green, and the BSA region is shown in blue.
Human Cpg Island Microarray (244k, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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human genome cgh 1×244k microarrays  (Agilent technologies)
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Agilent technologies human genome cgh 1×244k microarrays
Tumor hypermethylation of FOXB2 and FOXF1. ( A , B ) Bisulfite sequence results for 12 BRAF wildtype tumors and 8 BRAF mutant tumors, separated by the horizontal red line. Schematic display of the BSA region with <t>CpG</t> locations therein shown on top (blue). Sample IDs are given on the 5' end of the BSA region. Each circle depicts a CpG. Color code: gray = ND, white = 0% to 20%, yellow = 20% to 40%, orange = 40% to 60%, red > 60% methylation. ( C ) Boxplot showing average methylation percentage over all detected CpGs in BRAF wildtype and BRAF V600E tumors for FOXB2 (left) and FOXF1 (right). The box indicates the 25 and 75 percentiles, with the median shown in bold. Upper and lower outliers are shown as red and purple asterisks, respectively. ( D ) Schematic display of FOXB2 (top) and FOXF1 (bottom) loci depicting the location of the BSA regions in relation to MseI fragments detected on the Agilent array (significant fragments marked red, not significant as black). <t>CpG</t> <t>islands</t> are shown in green, and the BSA region is shown in blue.
Human Genome Cgh 1×244k Microarrays, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Summary of TCGA genomic datasets used in this study

Journal: Nature communications

Article Title: Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types

doi: 10.1038/ncomms4231

Figure Lengend Snippet: Summary of TCGA genomic datasets used in this study

Article Snippet: GBM , Agilent 244K microarray >500 samples , Agilent 244K microarray >500 samples , Agilent 8×15K miRNA microarray >480 samples.

Techniques: Microarray

Tumor hypermethylation of FOXB2 and FOXF1. ( A , B ) Bisulfite sequence results for 12 BRAF wildtype tumors and 8 BRAF mutant tumors, separated by the horizontal red line. Schematic display of the BSA region with CpG locations therein shown on top (blue). Sample IDs are given on the 5' end of the BSA region. Each circle depicts a CpG. Color code: gray = ND, white = 0% to 20%, yellow = 20% to 40%, orange = 40% to 60%, red > 60% methylation. ( C ) Boxplot showing average methylation percentage over all detected CpGs in BRAF wildtype and BRAF V600E tumors for FOXB2 (left) and FOXF1 (right). The box indicates the 25 and 75 percentiles, with the median shown in bold. Upper and lower outliers are shown as red and purple asterisks, respectively. ( D ) Schematic display of FOXB2 (top) and FOXF1 (bottom) loci depicting the location of the BSA regions in relation to MseI fragments detected on the Agilent array (significant fragments marked red, not significant as black). CpG islands are shown in green, and the BSA region is shown in blue.

Journal: Clinical Epigenetics

Article Title: BRAF mutation-specific promoter methylation of FOX genes in colorectal cancer

doi: 10.1186/1868-7083-5-2

Figure Lengend Snippet: Tumor hypermethylation of FOXB2 and FOXF1. ( A , B ) Bisulfite sequence results for 12 BRAF wildtype tumors and 8 BRAF mutant tumors, separated by the horizontal red line. Schematic display of the BSA region with CpG locations therein shown on top (blue). Sample IDs are given on the 5' end of the BSA region. Each circle depicts a CpG. Color code: gray = ND, white = 0% to 20%, yellow = 20% to 40%, orange = 40% to 60%, red > 60% methylation. ( C ) Boxplot showing average methylation percentage over all detected CpGs in BRAF wildtype and BRAF V600E tumors for FOXB2 (left) and FOXF1 (right). The box indicates the 25 and 75 percentiles, with the median shown in bold. Upper and lower outliers are shown as red and purple asterisks, respectively. ( D ) Schematic display of FOXB2 (top) and FOXF1 (bottom) loci depicting the location of the BSA regions in relation to MseI fragments detected on the Agilent array (significant fragments marked red, not significant as black). CpG islands are shown in green, and the BSA region is shown in blue.

Article Snippet: Cy5- or Cy3-labeled amplicons, representing methylated DNA fragments derived from tumor and normal samples, were co-hybridized to the Agilent 244 k human CpG island microarrays (#G4492A, Agilent Technologies) in a dye-swap setup.

Techniques: Sequencing, Mutagenesis, Methylation